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Em538.fa.gz (937.43 MB)
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Em538.gff (143.76 MB)
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Em538_predictedtranscripts.faa (19.85 MB)
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Em538-InterProScan.tar.gz (178.59 MB)
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Annotation for Asian Elephant Em538 10x+Hi-C Genome Assembly

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posted on 2023-02-10, 21:21 authored by Natalia Prado, Ellie E. Armstrong, Janine Brown, Shifra Goldenberg, Peter LeimgruberPeter Leimgruber, Virginia R. Pearson, Jesús E. Maldonado, Michael CampanaMichael Campana

Genome sequence (Em538.fa.gz) and AUGUSTUS v. 3.3.2 gene predictions (Em538.gff) for the Em538 ("Kandula") 10x+Hi-C assembly (NCBI Accession: JAOTIA020000000). Also provided are the InterProScan v. 5.60-92.0 functional analyses (Em538-InterProScan.tar.gz) of the AUGUSTUS-predicted transcripts (Em538_predictedtranscripts.faa).

Funding

Smithsonian Institution

Smithsonian Women's Committee [2015, grant #10; 2020, grant #22]

Friends of the National Zoo Conservation Grant [2016, grant #30]

George E. Burch Post-Doctoral Fellowship in Theoretical Medicine and Affiliated Theoretical Science

Dr. Janice Sanders

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    National Zoo and Smithsonian Conservation Biology Institute

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    Keywords

    Asian elephantElephas maximusGenomeAnnotationAssembly

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