No 2. DADA2 Workflow
2020-06-01T13:28:34Z (GMT) by
Output files from the No 2. DADA2 Workflow page of the Bocas Hypoxia study.
File names and descriptions:
RUN01_read_changes.txt: Tracking changes in read counts (per sample) from the beginning to end of the DADA2 workflow.
RUN02_read_changes.txt: Tracking changes in read counts (per sample) from the beginning to end of the DADA2 workflow.
combo_pipeline.rdata: contains sequence and taxonomy tables from the DADA2 pipeline needed for subsequent analyses. To see the Objects, in R run load("combo_pipeline.rdata", verbose=TRUE)
1) seqtab.1: Sequence table from Run01 before merging with Run02.
2) seqtab.1: Sequence table from Run02 before merging with Run01.
3) st.sum: merged sequence table before removing chimeras
4) st.all: duplicate of st.sum
5) seqtab: merged sequence table after removing chimeras
6) tax_silva: Silva (v132) taxonomy table of seqtab
7) tax_gg: GreenGenes taxonomy table of seqtab