(16s) No 2. Data Preparation (16S rRNA) Output
datasetposted on 14.08.2020 by Jarrod Scott
Datasets usually provide raw data for analysis. This raw data often comes in spreadsheet form, but can be any collection of data, on which analysis can be performed.
Output files from the No 2. Data Preparation Workflow page of the Bocas Hypoxia study.
File names and descriptions:
*seq_table.txt, *_tax_table.txt, *_asv.fasta: Sequence tables, taxonomy tables, and ASV fasta files from the full phyloseq object (before removing contaminants) and the trimmed dataset (after removing contaminants).
16s-data_prep.rdata: contains all variables and phyloseq objects from the data prep pipeline. To see the Objects, in R run load("16s-data_prep.rdata", verbose=TRUE)