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Phylogenetic tree data and Avipoxvirus consensus sequences for 'A Historical Hawaiian Avipoxvirus Genome Reconstructed from an 1898 Museum Specimen'

Version 2 2025-02-18, 20:45
Version 1 2024-05-20, 15:37
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posted on 2025-02-18, 20:45 authored by Madeline Eibner-Gebhardt, Robert Fleischer, Michael CampanaMichael Campana

We place an 1898 strain of Hawaiian Avipoxvirus in phylogenetic context using maximum likelihood trees of 9 conserved genes (4b core protein, DNA polymerase, mRNA capping enzyme large subunit, NTPase, P4a, RAP94, RPO132, RPO147, VETFL).

We provide consensus Avipoxvirus genome sequences for the USNM 169333 (amakihi_avipox_genome.fa) and CamMZ-27/Cor/5/gg/8 (alala_avipox_genome.fa) specimens.

The 82 GenBank sequence 4b core protein presented in Figure 1 is given in 4b_core_protein.nwk, while the extended dataset (529 sequences from GenBank) is available in 4b_core_protein_Extended.nwk.

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