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Supporting Datasets for "Parameterizing Pantherinae: de novo mutation rate estimates from Panthera and Neofelis pedigrees"

Version 2 2024-12-20, 14:27
Version 1 2024-05-20, 15:31
dataset
posted on 2024-12-20, 14:27 authored by Ellie E. Armstrong, Sarah B. Carey, Alex Harkess, Gabriele Zenato Lazzari, Katherine A. Solari, Jesus MaldonadoJesus Maldonado, Neel Aziz, Patricia Walsh, Robert C. Fleischer, Klaus-Peter Koepfli, Eduardo Eizirik, Dmitri A. Petrov, Michael CampanaMichael Campana

RatesTools configuration files and additional datasets for Panthera and Neofelis de novo mutation analyses. Configuration files are named using the convention: species_reference_dataset.config. Two configuration files are provided for each of the Neofelis runs as the two siblings required different minimum genotype quality (GQ) cut-offs.

Also provided is the list of lion y-mers and and 'mappable' genome assembly of the newly reported lion genome in FASTA format. The mappable genome consists of the assembly's haplotype 2 (including X chromosome) with the Y chromosome added.

Funding

Woodtiger Fund

Smithsonian Institution

National Science Foundation

National Institutes of Health

Chan Zuckerberg Initiative

Washington Research Foundation

United States Department of Agriculture

CNPq/Brazil

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