Version 2 2024-12-20, 14:27Version 2 2024-12-20, 14:27
Version 1 2024-05-20, 15:31Version 1 2024-05-20, 15:31
dataset
posted on 2024-12-20, 14:27authored byEllie E. Armstrong, Sarah B. Carey, Alex Harkess, Gabriele Zenato Lazzari, Katherine A. Solari, Jesus MaldonadoJesus Maldonado, Neel Aziz, Patricia Walsh, Robert C. Fleischer, Klaus-Peter Koepfli, Eduardo Eizirik, Dmitri A. Petrov, Michael CampanaMichael Campana
RatesTools configuration files and additional datasets for Panthera and Neofelisde novo mutation analyses. Configuration files are named using the convention: species_reference_dataset.config. Two configuration files are provided for each of the Neofelis runs as the two siblings required different minimum genotype quality (GQ) cut-offs.
Also provided is the list of lion y-mers and and 'mappable' genome assembly of the newly reported lion genome in FASTA format. The mappable genome consists of the assembly's haplotype 2 (including X chromosome) with the Y chromosome added.