Test Dataset for 'RatesTools: a Nextflow pipeline for detecting de novo germline mutations in pedigree sequence data'
Test dataset for RatesTools.The wolf sequencing reads are subset from SRA accessions SRR1518530-SRR1518532 from BioProject PRJNA255370 (Fan et al. 2016) and SRR9095635-SRR9095636,SRR9095638 from BioProject PRJNA543877 (Koch et al. 2019). The reference genome chromosomes derive from the domestic dog genome assembly canFam3.1 (Hoeppner et al. 2014).
Example expected output files from the test dataset are included in the ExpectedOutput.tar.gz file. Please note that results will vary due to the use of different random number seeds in the component pipeline analysis steps.
The ExampleConfigurations.tar.gz file contains the final configuration files for the analyses described in Armstrong & Campana 2022. Please note that these were generated using RatesTools version 0.5.6.