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(high-temp) No 1. DADA2 Workflow (16S rRNA/ITS) Output

dataset
posted on 06.05.2022, 13:05 by Jarrod ScottJarrod Scott

Output files from the No 1. DADA2 Workflow page of the SWELTR high-temp study. 16S rRNA Data
ssu18_seqtab.rds: Sequence table before chimera checking.
ssu18_seqtab.nochim.rds: Sequence table after chimera checking.
ssu18_tax_silva.rds: Silva (v138) taxonomy table of ssu18_seqtab.nochim.rds.
ssu18_tax_id.rds: IDTAXA taxonomy table of ssu18_seqtab.nochim.rds.


ITS Data
its18_seqtab.rds: Sequence table before chimera checking.


File names and descriptions:


its18_seqtab.nochim.rds: Sequence table after chimera checking.

its18_tax.rds: UNITE general FASTA release for Fungi (v. 04.02.2020) taxonomy table of its18_seqtab.nochim.rds.


Source code for the workflow can be found here:

https://github.com/sweltr/high-temp/blob/main/dada2.Rmd

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